New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Develop #45

Merged

rob-p merged 4 commits into COMBINE-lab:develop from an-altosian:develop

Jan 6, 2025

an-altosian commented Dec 31, 2024

Allow load_fry to take multi-column cell barcode files.
Remove pyranges related stuff, including expanded reference construction and id2name, from the codebase
add two new arguments to load_fry:
1. aux_columns: The auxiliary column names in the cell barcode file. The default values are X and Y
2. gene_id_to_name: The path to an id2name file. If not provided, it tries to find the gene_id_to_name.tsv file in the quant dir generated by simpleaf.

an-altosian added 4 commits

December 31, 2024 22:58


          add two args to load_fry

2700c4a


          fix bug

8fd7b45


          add warning if provided id2name file doesn't exist

57d2d05


          update testing workflow

e40b5b6

rob-p approved these changes

View reviewed changes

Contributor

rob-p left a comment

Thanks @an-altosian; we are officially a roers-only shop for splici/u construction now :).

rob-p merged commit f96cf66 into COMBINE-lab:develop

2 checks passed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet